D. Zhang, F. Yin, Q. Qin, L. Qiao*, Molecular Responses During Bacterial Filamentation Reveal Inhibition Methods of Drug Resistant Bacteria, PNAS, 2023, 120, e2301170120

Y. Zong, Y. Wang, Y. Yang, D. Zhao, X. Wang, C. Shen, L. Qiao*, DeepFLR Facilitates False Localization Rate Control in Phosphoproteomics, Nature Communications, 2023, 14, 2269

Y. Yang#, G. Yan, S. Kong, M. Wu, P. Yang, W. Cao#,*, L. Qiao*, GproDIA enables data-independent acquisition glycoproteomics with comprehensive statistical control, Nature Communications, 2021, 12: 6073

Y. Yang, X. Liu, C. Shen, Y. Lin, P. Yang, L. Qiao*, In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics, Nature Communications, 2020, 11: 146

R. Zhang, Y. He, J. Yi, L. Zhang, C. Shen, S. Liu, L. Liu, B. Liu, L. Qiao*, Proteomic and Metabolic Elucidation of Solar Powered Biomanufacturing by Bio-Abiotic Hybrid System, Chem, 2020, 6, 234-249

E. Wu#, V. Mallawaarachchi#, J. Zhao, Y. Yang, H. Liu, X. Wang, C. Shen, Y. Lin, L. Qiao*, Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics, Microbiome, 2024, DOI: 10.1186/s40168-024-01775-3

E. Wu, Y. Yang, J. Zhao, J. Zheng, X. Wang, C. Shen, L. Qiao*, High-Abundance Protein-Guided Hybrid Spectral Library for Data-Independent Acquisition Metaproteomics, Analytical Chemistry, 2024, 96, 1029-1037

D. Zhang, L. Qiao*, Microfluidics Coupled Mass Spectrometry for Single Cell Multi-Omics, Small Methods, 2024, 8, 2301179

Z. Wang, B. Liu, L. Lin*, L. Qiao*, Mass Spectrometry for Mitochondrial Multi-omics, Trends in Analytical Chemistry, 2023, 163, 117063

J. Zhao#, Y. Yang#, H. Xu#, J. Zheng, C. Shen, T. Chen, T. Wang, B. Wang, J. Yi, D. Zhao, E. Wu, Q. Qin*, L. Xia*, L. Qiao*, Data-independent acquisition boosts quantitative metaproteomics for deep characterization of gut microbiota, npj Biofilms and Microbiomes, 2023, 9: 4

Z. Han, X. Peng, Y. Yang, J. Yi, D. Zhao, Q. Bao, S. Long, S.-X. Yu, X.-X. Xu, B. Liu, Y.-J. Liu, Y. Shen, and L. Qiao*, Integrated Microfluidic-SERS for Exosome Biomarker Profiling and Osteosarcoma Diagnosis, Biosensors and Bioelectronics, 2022, 217, 114709

Y. Dai, C. Li, J. Yi, Q. Qin, B. Liu, L. Qiao*, Plasmonic Colloidosomes Coupled MALDI-TOF MS for Bacterial Heteroresistance Study at Single-Cell Level, Analytical Chemistry, 2020, 92, 8051–8057

S. Long#, Y. Yang#, C. Shen, Y. Wang, A. Deng, Q. Qin*, L. Qiao*, Metaproteomics characterizes human gut microbiome function in colorectal cancer, npj Biofilms and Microbiomes, 2020, 6:14

D. Zhang, Y. Yang, Q. Qin, J. Xu, B. Wang, J. Chen, B. Liu, W. Zhang*, L. Qiao*, MALDI-TOF Characterization of Protein Expression Mutation During Morphological Changes of Bacteria Under the Impact of Antibiotics, Analytical Chemistry, 2019, 91, 2352-2359

L. Qiao, J. Yi, Detection and Analysis of Microorganisms by Mass Spectrometry, Royal Society of Chemistry, DOI: https://doi.org/10.1039/9781837670338, ISBN: 978-1-83916-763-8